Now what am I doing wrong? The Scroll Menu in Folio links to the wrong page and then all links quit working. Clicking on them does nothing. How do I get the links to open the correct pages and have them all still work? Under construction at www.vanitylabels.com .

Hello,
the scroll menu tem can scroll only to a section or module which is availabe.
The scroll menu cant scroll to a Joomla article

Is there any way around that? I really need some menu items linked to a particular page. I tried installing a separate menu but that didn't work either.

I'm assuming a non-answer means there is no workaround.

The reason I was so drawn to the folio template was because of that portrait/vertical slideshow since I need to put photographs there. Is there a multi-page template that I can modify the front page to show a portrait/vertical slideshow? From looking at the demo's I can't really tell.

A multi site is very difficult.
You need a scrollmenu and another menu.
And the scrollmenu must be publisched only on some sites. You can do this with layouts and assignment.
www.joomlaplates.com/support/documentation/warp-7-layouts